New records and modelling the impacts of climate change on the black-tailed marmosets
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RESEARCH ARTICLE New records and modelling the impacts of climate change on the black-tailed marmosets Alme´ rio Caˆ mara GusmãoID1*, Joˆ ine Cariele Evangelista-ValeID2, João Carlos Pires-OliveiraID3, Adrian A. Barnett4,5,6, Odair Diogo da Silva7 1 Programa de Po´ s-Graduac¸ão em Biotecnologia e Biodiversidade, Rede Bionorte, Universidade do Estado de Mato Grosso, Ca´ ceres, Mato Grosso, Brazil, 2 Programa de Po´ s-Graduac¸ão em Desenvolvimento Sustenta´ vel, Centro de Desenvolvimento Sustenta´ vel, Universidade de Brası´lia—UnB, Brası´lia, DF, Brazil, 3 Programa de Po´ s-Graduac¸ão em Ecologia, Universidade do Estado de Mato Grosso, Nova Xavantina, Mato Grosso, Brazil, 4 Department of Zoology, Federal University of Pernambuco, Recife, Pernambuco, Brazil, 5 Amazon Mammals Research Group, National Institute for Amazonian Research, Instituto Nacional de Pesquisas da Amazoˆ nia, Manaus, AM, Brazil, 6 Department of Life Sciences, Roehampton University, London, United Kingdom, 7 Programa de Po´ s-Graduac¸ão em Ciências Ambientais, Centro de Pesquisa de Limnologia, Biodiversidade, Etnobiologia do Pantanal, Universidade do Estado de Mato Grosso, Ca´ceres, Mato Grosso, Brazil * almeriocg@hotmail.com Abstract Climate change represents an unprecedented threat to global biodiversity and, for many species, gaps in our knowledge of their biology remain acute. Gaps in baseline knowledge, such as confirmed identifications (Linnean shortfalls) and adequate collections (Wallacean shortfalls), need to be minimized with new studies, since this is often critical for effective con-
servation. Despite the increase in scientific research on primates in the southwest of the Brazilian Amazon, little is known about the species Mico nigriceps (Ferrari & Lopes, 1992) Primates, Platirryni. In the current study, we sought to reduce the extent of the Wallacean shortfall for M. nigriceps, understand whether climate change represents a threat to the dis- tribution of the species, and identify priority areas for its conservation. Accordingly, we pro- vide 121 new records in 14 locations, obtained directly from the field, and five from the literature. Using this, we carried out ecological niche modeling, to better understand how environmental suitability might limit the area occupied by the species. We then projected a distribution for 2070 with the SSP2-4.5 (more optimistic) and SSP5-8.5 (more pessimistic) scenarios. Our data confirmed the geographic distribution of the species as being restricted to headwaters of the Ji-Parana´ /Machado river, but with a 400 km extension to the south. Under the modeled climate change scenarios, the area suitable for the species declines by 21% under the most optimistic, and by 27% in the pessimistic, scenario across the projected 50-year period. Although we have expanded the area of known occurrence for this species, we point out that climate change threatens the stability of this newly-discovered population strongly, and that this danger is intensified by deforestation, fire and hunting. We recom- mend that further studies be carried out to confirm the presence of the species in adjacent
areas, those indicated by generated models as being potential environmentally suitable. In addition, we recommend intensifying forest restoration in currently pastured areas, and PLOS ONE PLOS ONE | https://doi.org/10.1371/journal.pone.0256270 September 7, 2021 1 / 14 a1111111111 a1111111111 a1111111111 a1111111111 a1111111111 OPEN ACCESS Citation: Gusmão AC, Evangelista-Vale JC, Pires-Oliveira J, Barnett AA, da Silva OD (2021) New records and modelling the impacts of climate change on the black-tailed marmosets. PLoS ONE 16(9): e0256270. https://doi.org/10.1371/journal. pone.0256270 Editor: Fabio de Oliveira Roque, Universidade Federal de Mato Grosso do Sul, BRAZIL Received: December 6, 2020 Accepted: August 3, 2021 Published: September 7, 2021 Copyright: © 2021 Gusmão et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Data Availability Statement: All relevant data are within the paper and its Supporting Information files. Funding: The Coordenac¸ão de Aperfeic¸oamento de Pessoal de Nı´vel Superior (CAPES) has granted research scholarships for doctoral studies to ACG, JCPO and ODS. The Conselho Nacional de Desenvolvimento Cientı´fico e Tecnolo´gico (CNPq) has granted research scholarships for doctoral studies to JCEV. Thus, all sources of funding are recognized, and we declare that we do not receive
protection of the areas forming the current and future habitat of this species through such measures as protected area creation. Introduction Threats to global biodiversity have reached unparalleled levels, with the majority caused directly or indirectly by human activities [1, 2]. Since they threaten the survival of taxonomic groups in diverse ecosystems, such occurrences represent an unprecedented challenge for con- servationists planet-wide [3–7]. Prominent among these is climate change, which is being accelerated by industrial activities and changes in land use [3]. While the impacts of climate change on scientifically-described species are alarming, their potential impact on species for which knowledge is still limited is also of great concern. Such losses are incalculable due to the many knowledge gaps in terrestrial biodiversity. This includes gaps in such basic information as the abundance (Prestonian shortfalls), evolutionary patterns (Darwinian shortfalls), limits of species traits (Raunkieran shortfalls), form of biotic interac- tion (Eltonian shortfalls), abiotic tolerances of species (Hutchinsonian shortfalls),species distri- bution patterns (Wallacean shortfalls), and the taxonomic delimitation of species (Linnean shortfalls) [8, 9]. Such gaps present a particular challenge for those who wish to understand species distribution patterns so as to develop effective conservation strategies [10]. Such issues are aggravated in megadiverse regions, such as the tropics, where species richness per unit area is greatest, but overall knowledge is poor [3].
Basic questions of taxonomy and distribution exist even for high-profile groups such as pri- mates, especially for smaller-bodied species. For Neotropical primates, for example, despite the increase in the general number of studies, the species Mico nigriceps [11] (Primates: Calli- trichidae) remains one of the least-known primates, with a lack of even basic information, such as geographic distribution and general ecology [11]. The original description of M. nigri- ceps [11] indicated the geographic distribution was unknown in its entirety, with only two locations being confirmed in the Madeira-Marmelos interfluvium, on the mid-section of the Madeira river, in the Brazilian states of Amazonas and Rondoˆnia. Prior to this, Mico popula- tions from the head of the Ji-Parana´/Machado river had been allocated to M. emiliae [12], based on studies of specimens collected during studies by the Integrated Development Pro- gram of Northwest Brazil (POLONOROESTE). These were collected in the district of Nova Brası´lia (today the municipality of Ministro Andreazza, Rondonia State), and their taxonomic allocation was followed by subsequent studies [11, 13–15]. Mico nigriceps has the general color pattern characteristic of the argentatus group [11]: the body is silvery-gray, with the coat dark- ening on the posterior and ventral parts of the body; the dark pigmentation of the face and ears is a diagnostic characteristic of the species; the general pattern is for black extremities; the arm, mantle and belly have light brown and orange tones, the back is brown, and the hind
limbs brownish-orange; the tail is completely black [11]. Nearly three decades after its scientific description, M. nigriceps is still little-known scientifi- cally. Current knowledge of the species is limited to that given by Ferrari and Lopes [11], plus subsequent additional data-points [16]. Accordingly, an expansion of knowledge of the spe- cies, its ecology and true distribution, thus minimizing the effects of Wallacean and Linnean shortfalls, is highly desirable, especially given that the species appears on the Brazilian List of Endangered Species as Data Deficient (DD) [17]. In addition, the extent of habitat destruction in the region where the species occurs has been severe, especially in recent years, as policies of PLOS ONE Modeling of Mico nigriceps PLOS ONE | https://doi.org/10.1371/journal.pone.0256270 September 7, 2021 2 / 14 any direct financial benefits that may result from the publication. Competing interests: No authors have competing intests.
the incumbent Brazilian government have resulted in a loosening of environmental law enforcement, and enhanced natural habitat degradation [18]. In this context, Ecological Niche Modeling (ENM) can be used to guide sampling efforts. The ENM produces layers of range of species distribution, using the environmental variables of locations with known occurrence records, that is, allows determination to a species her envi- ronmental suitability area (ESA). This can, by extrapolation, be used to identify new sites where occurrence is likely, thus helping to minimize the effects of any Wallacean Shortfall [19]. In addition, ENM makes it possible to project into the future the distribution of species suitability under different climate change scenarios. This allows assessment of the extent and nature of the effects of climate change on the distribution of the target species, making it highly relevant for guiding biodiversity conservation policies, such as measures aimed at creating and maintaining conservation units [20, 21]. As a result, ENM is a useful scientific tool for improv- ing knowledge of little-known species, such as M. nigriceps, as well as enabling quantified esti- mates of the degree of threat that such species will face under various climate change regimes. In the current study we have used a new set of field-derived records and ENM to achieve the following objectives: 1) expand the known distribution area of the species Mico nigriceps; 2) Identify locations with highest potential environmental suitability for this species; and 3) to
understand whether climate change will affect the extent and distribution of areas environ- mentally suitable for this species, considering the predictions for the year 2070. Materials and methods Study area We collected M. nigriceps location records via direct field sampling efforts in an area located between the middle Ji-Parana´/Machado and Comemorac¸ão rivers (Fig 1). Sampling occurred between June 2008 and January 2020. The regional phytophysiognomy is of Open Rainforest [22], containing terra firme (never-flooded) and floodplain (igapo´) forest forms throughout. The climate is of the tropical AW type (warm and humid), with a dry season during the coldest months (June to September), and a rainy season during the warmer months (December to March), with an average temperature of 26˚C [23]. Occurrence records The new M. nigriceps records were obtained during five expeditions: a rapid inventory of pri- mates at Fazenda Cajazeiras, carried out between June 20, 2008 to June 29, 2008, “Line 2”, Cacoal, Rondoˆnia, Brazil, totaling 72 hours of sampling effort; rapid mastofaunal inventory of Sı´tio Laranjeiras, carried out on February 12 and 13, 2009, “Line 10”, Cacoal, Rondoˆnia, total- ing 16 hours of sampling effort; a survey in the Jaru Biological Reserve, from October 28 to 30, 2016, in the city of Ji-Parana´, Rondoˆnia, totaling 26 h of sampling effort. Other records occurred opportunistically during travel within the region. To identify the species, we photographed the animals encountered during field studies, and
collected four specimens found as road-kill. These specimens were taxidermized and deposited in the Mastozoologica Collection of the Limnology, Biodiversity and Ethnobiology Research Center of the Pantanal, Mato Grosso State University, Ca´ceres, Mato Grosso, Brazil, (CELBE-- M-ODS-002; CELBE-M-ODS -003; CELBE-M-ODS-010 and CELBE-M-ACG-1399). They were used for comparison with the illustrations and diagnosis of M. nigriceps described in Fer- rari & Lopes (1992) [11], and images of skins available in Garbino (2014) [28]. We also com- pared them with skins of the species deposited at the Museu Paraense Emı´lio Goeldi (MPEG 22960; MPEG 22962). Comparison of museum collection specimens, and the photographs of the encountered animals, confirmed the species identification. We used the occurrence PLOS ONE Modeling of Mico nigriceps PLOS ONE | https://doi.org/10.1371/journal.pone.0256270 September 7, 2021 3 / 14
records available in the literature, and the new records obtained through this study to generate ecological niche models. Brazilian law requires that the collection of dead animals, such as those collected in this study, require prior authorization from the responsible environmental agency (Normative Instruction 03/2014, Article 25, paragraph 3). According to this legislation, we obtained a Fig 1. Study area map. Map of southwestern Brazilian Amazon showing new records of M. nigriceps, and the other known records of species of the genus Mico. The records for M. rondoni were extracted from [24, 25]; M. melanurus records are from [26, 27]; M. intermedius and M. marcai records were extracted from [28]. Reprinted from Souza et al. (10.3390/rs12172735) under a CC BY license, with permission from MapBiomas project, original copyright 2019. MapBiomas Project—Collection 5 of the Annual Series of Coverage and Land Use Maps in Brazil, accessed on 04/14/2021 through the link: https://mapbiomas.org/colecoes-mapbiomas-1?cama_set_ language=pt-BR. Shapefiles by: Ministe´rio de Meio Ambiente. https://doi.org/10.1371/journal.pone.0256270.g001 PLOS ONE Modeling of Mico nigriceps PLOS ONE | https://doi.org/10.1371/journal.pone.0256270 September 7, 2021 4 / 14
permanent license for the collection of zoological material (Number: 6825–1) from the Chico Mendes Institute for Biodiversity Conservation—ICMBio, on behalf of the Museu Paraense Emilio Goeldi, through the Biodiversity Authorization and Information System—SISBIO. Thus, for the execution of this research and the eventual disclosure of data, we are supported ethically and legally. As specimens studied were road-kill victims, ethics committee permission to sacrifice the animals was not required since, according to Brazilian legislation, this kind of collection does not require other legal documents, just the possession of a generalized license for the collection of zoological material. Ecological Niche Modeling (ENM) Environmental variables. The literature recommends a cautious approach to choosing the size of the area to be analysed, as this can greatly affect the performance of the models [29, 30]. Size of chosen area must also be commensurate with study aims: accordingly, our models were generated for the entire neotropical region [31], since we aimed to identify all new suit- able sites with for the target species, so using a more circumscribed area could limit the identi- fication of such areas. To produce the ENM, we obtained 19 bioclimatic variables from the WolrdClim 2.0 [32] database. We also used ten edaphic and topographic variables, that is, six variables with soil physical properties (depth to bedrock, bulk density, clay, coarse, sand, and silt) from SoilGrids database (https://soilgrids.org/) and three topographic variable: elevation, obtained from the
EarthEnv database (http://www.earthenv.org/); and aspect and slope, obtained using the ter- rain function of the raster package from R [33, 34] (see S1 Table in S1 File). The variables were clipped for the neotropical region using a shapefile mask (available at http://ecoregions2017. appspot.com/), and then were resampled at a 5-minute arc-sine resolution (~ 10k). To test for collinearity between the selected variables, we performed two Principal Compo- nent Analysis (PCA). PCA 1 was generated for the bioclimatic variables, from which we selected the first six axes as model predictors, since these explained ~ 95% of data set variation over the neotropical region. We performed a second PCA (PCA 2) for the edaphic and topo- graphic variables, selecting the first two axes, which represented 66% of the variation within the same region. We attributed less weight to the variables in this second PCA because biocli- matic variables form the central focus of the current study. We generated projections for the bioclimatic variables, to 2070, under two different green- house gas emission scenarios generated by the Intergovernmental Panel on Climate Change (IPCC): a more optimistic scenario (SSP2-4.5), and the more pessimistic (SSP5-8.5). We chose 2070 as the period in which to understand the effects of climate change on the distribution of this species to provide an extensive, but still tangible, period of time, and to reduce the effects of uncertainties arising from climate projections beyond 2090 [4].
These simulated variables were produced based on the projections of the Coupled Model Intercomparison Project Phase 6 (CMIP6) [33]. The CMIP6 provides different scenarios based on the socio-economic pathway chosen (SSP) [34]. We did not run a new PCA on the variables of the future, as this would cause a loss of correspondence between the PCA axes produced for the current and the future variables. Using the PCA Projection function of the R package ENMGadgets [5], we produced a PCA using current variables, and designed the linear coeffi- cients of the current PCA using the future variables. This controlled for the percentage of explanatory power of each variable for each PCA axis in both the present and the future with- out losing correspondence between the PCAs [35]. PLOS ONE Modeling of Mico nigriceps PLOS ONE | https://doi.org/10.1371/journal.pone.0256270 September 7, 2021 5 / 14
In a similar manner, the ten edaphic and topographic variables were summarized on PCA axes, using a Broken-Stick model to select the number of axes to be included in each model. According to the premises of Broken-Stick modeling, the PCA axes selected, were the two that explained more of the variation than the null model produced by the analysis. Since there are no temporal projections of edaphic and topographic variables, the two more informative com- ponents selected by the broken-stick criterion were used in all climate scenarios, since we do not expect geological processes to act in such a short time. On the other hand, such variables are important in modeling [36], and we chose to include them, but used the same edaphic and topographic PCAs axes created with the present-day variables to build the projections of envi- ronmental suitability for all present and future changes scenarios used in this study [37]. Modeling. For modeling the following algorithms were used using the R biomod2 pack- age, following [38]. We used nine algorithms: Generalized Boosted Models (GBM), Classifica- tory Tree Analysis (CTA), Random Forest (RF), Generalized Linear Model (GLM), Generalized Additive Model (GAM), Artificial Neural Networks (ANN), Flexible Discrimi- nant Analysis (FDA), Multiple Regression Adapted for Splines (MARS) and Maximum Entropy (MAXENT). During modeling, M. nigriceps occurrence records were tallied using a gradient system based on cells 10km X 10km per side. We did not obtain a minimum of 25 spatially unique
occurrence records, that is, a single record in a cell of 100km2, which would add at least 25 cells to the grid with an occurrence record in each. Due to the small amount of data available, we used the Jackknife approach for training and evaluating model performances [39, 40]. In this approach, an occurrence record is removed from the modeling and the capacity of the model to predict the existence of the removed locality is tested. We repeated the procedure of removing an occurrence record until all points had been excluded from the modeling at least once, and then evaluated performance with a binomial test, which showed whether our model was better than one produced at random [40]. Most modeling algorithms require data with presence and absence records for the modeled species. However, confirmed absence data is rare for most species, and in these cases we used pseudo-absences (PAs). PAs are random points selected within the study area background that serve to represent absences when calibrating and evaluating models. We calibrated each algo- rithm using the biomod2 package default configuration, as this modifies only pseudo-absence numbers (PAs). In such cases, the PAs in GBM, RF and CTA were ranked based on the number of occurrences, as recommended by [41]. For GLM, GAM, ANN, FDA, MARS and MAXENT models, 10000 PAs points were randomly selected, following [42]. In addition, PAs were gener- ated using the two sets of algorithms via a disk arrangement, which defined the minimum and
maximum distances at all points of occurrence available for the species, with PAs sampled within these minimum and maximum limits, that is, inside the “disk” [38]. A set of 10 PAs was run in 10 modeling sequences for each set of PAs, equivalent to 100 models for each algorithm [39]. After removing an occurrence record, producing the models and obtaining the maps with the continuous projections of each algorithm, we joined the projections of all algorithms in a single continuous averaged ensemble map. We performed this procedure every time we removed an occurrence record. After obtaining the continuous modeling maps, we built binary representation maps, where 0 indicates absence and 1 presence of the species. To produce such binary maps, we used the threshold that maximizes the sum of sensitivity and specificity, com- monly called MaxSpecSens or ROC Threshold [42], so that all cells in the study area that had suitability values above the threshold were considered as presence (value 1), while all study area values with suitability less than the threshold were marked as species absent (value 0). Finally, we combined all the binary maps that matched the points left out of the modeling into a final consensus map that represented the most suitable conditions for M. nigriceps. We PLOS ONE Modeling of Mico nigriceps PLOS ONE | https://doi.org/10.1371/journal.pone.0256270 September 7, 2021 6 / 14
did this for the present and for the two future climate change scenarios. All maps were edited with ArcGIS 10.5 software. Results In total, 121 individuals of M. nigriceps were recorded across the 14 field locations studied (Fig 2 and S2 Table in S1 File). To this were added five records available from the literature. How- ever, due to the close proximity of the locations from which the occurrence records were obtained, we had only seven spatially unique occurrence points, that is, distributed individu- ally in 10kmx10km each side cells to generate the models. The new set of records, obtained for the species in the current study, reveal a range that is far more extensive than known previously, occupying an area from the mouth of the Ji- Parana´/Machado river to its headwaters and west of the upper Roosevelt river (S2 Table in S1 File). This, limited to the south by a non-forested grassland-covered plateau. The conducted ecological niche modeling analysis performed better than random (p> 0.0001). Overall, ENM indicates that, under the current climate scenario, the area of environmental suitability for the species occupies a large swathe of the neotropics (Fig 3), with models indicating that the AES for the species occurs both in the original area of occurrence, and in the region covered by the new records presented in the current study (Fig 3). Based on projections for 2070 using cur- rently predicted climate change scenarios, the species will lose 100% of AES in its historically- known distribution under all run scenarios. Under SSP2-4.5, the most optimistic scenario, the
Fig 2. Analyzed skins. Road-kill derived specimens deposited in the Mastozoologia collection, CELBE Pantanal, and analysed for the current study (Photo: O. Silva- Diogo). https://doi.org/10.1371/journal.pone.0256270.g002 PLOS ONE Modeling of Mico nigriceps PLOS ONE | https://doi.org/10.1371/journal.pone.0256270 September 7, 2021 7 / 14
species AES will decline 30.4%; while in the most pessimistic scenario (SSP5-8.5), the AES loss was modeled as 85.11% of the current AES for the species. Fig 3. Modeling-generated map. Modeling-generated map of current and future distributions for M. nigriceps. Mico nigriceps illustration reprinted from Ferrari and Lopes (1992) under a CC BY license, with permission from Stephen D. Nash, original copyright 2021. Shapefiles by: Ministe´rio de Meio Ambiente. AES Area. https://doi.org/10.1371/journal.pone.0256270.g003 PLOS ONE Modeling of Mico nigriceps PLOS ONE | https://doi.org/10.1371/journal.pone.0256270 September 7, 2021 8 / 14
The results also indicate the presence of M. nigriceps in protected areas (PAs) and indige- nous land (IL) (S2 Table in S1 File) under the current climate regimen, both for the geographic range as originally described (282.83 km2), as well as for the newly-expanded distributional area reported by the current study (252,978.69 km2). In total, under the current climatic regime 7.25% of the expected area of occurrence of the species overlaps with protected areas. However, most of the distribution of the species area (~82.8%) overlaps with areas under pas- ture and on private properties. In the future, this scenario worsens, as AES for M. nigriceps in PAs and ILs is predicted to occur only in the area of occurrence added by the current study, declining to 4,552.96 km2 in the SSP2-4.5 scenario and 32.39 km2 in the SSP5-8.5 scenario. Both climate change scenarios indicate that there will be AES for this species only in IL Sete de Setembro (Table 1). Discussion The results obtained during this study considerably expanded the number of known M. nigri- ceps records, which enabled to know better the distribution of the species and to model its AES. When the geographic distribution limits of M. nigriceps were defined by [11], it included the area east of the Ji-Parana´/Machado and Madeira rivers, and west of the Marmelos river. The southern limit was described as a plateau of non-forested land that separates the head of the Marmelos river from the right bank of the Ji-Parana´ river. Consequently, the new occur-
rence records have provided evidence of a range extension of the distribution of more than 400 km south. This more than doubles the extent of the scientifically-established distribution of the species, and can be considered as a good approximation of the area of M. nigriceps´s dis- tribution. The confirmation of the presence of species to the south of its formerly known range is of great importance, precisely because it is an area where a large area of native forest (and hence suitable habitat) still remains. The models shows that the known area of distribution of the species [11] occupies only a small part of the potential AES indicated by the ENM [11]. The ENM indicated adjacent areas with AES potential for the species, which highlights the need for studies in these new areas to confirm these predictions [9]. Results also suggest that the type locality may occupy a periph- eral portion of the actual geographic range of the species. This reinforces the important contri- bution that ENM can make to rare species conservation studies, since the models generated under the present climate scenario indicate an area of environmental suitability for the species in the areas where our field surveys confirmed actual presence. Thus, this tool can be useful for guiding future studies on other species whose true distribution is little known. Table 1. Protected areas (PAs) and indigenous lands (ILs) with AES for M. nigriceps in current climate scenario, and under the scenarios SSP2-4.5 and SSP5-8.5 (expressed as km2). Histo´rical occurence area Current climate SSP-4.5 SSP-8.5
PA Nova Aurora 18.52 - - PA Gibeão 31.29 - - PA Irmão Satelis 41.09 - - PA Jaru 125.76 - - IL Roosevelt 141.65 141.65 - IL Igarape´ Lourdes 1,816.87 605.88 - IL Zoro´ 2,656.59 1,575.40 - IL Sete de Setembro 248,146.92 2,230.04 32.39 Total 152,978.69 4,552.96 32.39 https://doi.org/10.1371/journal.pone.0256270.t001 PLOS ONE Modeling of Mico nigriceps PLOS ONE | https://doi.org/10.1371/journal.pone.0256270 September 7, 2021 9 / 14
Our results also indicate that climate change will have a negative impact on the area of occurrence of this species, both that historically-known and the area newly-added by the cur- rent study, especially in the most pessimistic scenario, SSP5-8.5. Under both optimistic and pessimistic climate change scenarios, AES losses in the previously-known area of occurrence [11] will be 100%. Additionally, it will also be very severe in both the new area of distribution described in this study, and in the areas adjacent areas indicated by ENM as likely to harbor the species. Even under the most optimistic scenario, losses to the M. nigriceps AES will be sig- nificant. This reinforces the opinion that biodiversity in the southern Amazon region will be strongly impacted by changes in climate [43], with the current study acting as a bellwether for this. Modeling points to other work that the climate change in the neotropical region has been affecting the distribution of low mobility mammal species since the last glacial maximum [44]. In the future, this trend could to aggravate associated with deforestation that can take approxi- mately 25% of mammalian species to lose> 40% of their current habitat [45]. This is especially worrying for neotropical primates that lives in trees. Thus, due the changes in environmental conditions, enhanced by the intensification of highly-impactful human activities [46] the sta- bility of primates populations is also at risk, as already discussed for Ateles chamek, Lagothrix
cana and Leontopithecus chrysopygys [47–50], mainly in the Amazon / Cerrado Ecotone Region. The probability of a decrease in the occurrence of these species is intensified under future climate change scenarios, since the habitat fragmentation associated with changes in cli- mate conditions strongly threatens population stability, as well as with interaction networks with other populations [46]. Therefore, climate change threatens the existence of species like M. nigriceps, whose histori- cal shortfalls in identification and sampling have been remedied only recently. The results of the current study highlight the need to intensify field studies so that conservation actions can be prepared for other species in similar situations. For these, ENM can assist in identifying both study areas, and priority sites for the effective conservation of such species [50]. For M. nigriceps, the loss of an AES within its current range represents a threat to the existence of the local population, which can be a prelude to the extinction of the species as a whole [51]. As a member of an iconic taxon, the primates, measures to conserve M. nicriceps species would act as an umbrella for the protection of many others in the region. Accordingly, we sug- gest efforts are concentrated in areas with the greatest suitability for such species, especially those which contain native vegetation, but which do not yet have legal status as protected area. Private areas with native forests are also important for species conservation. For this, investing
in land use planning must be a priority, since they can establish such areas as Legal Reserve and Environmental Preservation Areas, as governed by Brazilian legislation. This should be both studied and have protection extended to them. We emphasize the necessity of intensify- ing conservation efforts linked to this species, since the area that modeling indicates as environmentally appropriate for it is located in the Brazilian Amazon “arc of deforestation”. The biodiversity of this region has been severely impacted by human actions resulting from the expansion of export-related agricultural activities, in addition to deforestation, which has increased exponentially in recent years [52] and recent fires, mainly in the years 2019 and 2020 [52]. These actions have been intensified by the weakening of environmental protection poli- cies in Brazil, especially in the Amazon [53]. This increases the need to carry out reforestation activities in these areas, as well as in areas used as pastures. While this should occur in priority areas, we would also suggest this action be implemented in adjacent areas, with lower possibil- ity of predicted future occurrence. We suggest this since it both provides protection to the pri- ority areas, via buffering, and strengthens the connectivity matrix between the forest fragments, enabling long-term population viability. PLOS ONE Modeling of Mico nigriceps PLOS ONE | https://doi.org/10.1371/journal.pone.0256270 September 7, 2021 10 / 14
Although climate change may seem to be a distant threat, the pressure from human activi- ties may lead to the end of the occurrence of M. nigriceps, and many associated species, in the region in a very short period of time, and in a few decades they will be able to overcome the impacts of deforestation [54]. Climate change is an additional impact on this primate, as well as other species, in a region already under severe anthropic pressure. Furthermore, despite the conservation potential the protected areas represent [55], our projections for the two future cli- mate change scenarios considered indicates that the environmental suitability for the species in both these areas will decrease. This may be related to the intensification of the effects of cli- mate change in the southern part of the Amazon [34]. This demonstrates that not even the presence of protected areas will be sufficient to effectively conserve this species, since human actions increasingly threaten the integrity of the biodiversity they currently protect. We suggest that M. nigriceps be a co-beneficiary in the case of conservation of carbon stocks, since the stimulus will occur in the conservation of Protected Areas and priority areas on private lands. This will be most pronounced in the case of forest restoration in regions with potential distribution of the species in the south of the species distribution, where the greatest loss of habitat is concentrated. However, as has been shown analytically [56] prioritizing the
carbon stock alone does not meet the conservation goals of a species. This suggests that, to achieve these goals, investments must simultaneously follow the objectives of conservation of the species and conservation of carbon stocks. Conclusion Our work demonstrates the need for a broad sampling of species occurrence sites in order to better understand species distribution, as this allows for more accurate model calibration, which is useful to better plan species conservation strategies. In addition, we highlight the risks inherent in the deficient knowledge of the range of distribution of species, which can lead to imprecise conservation strategies. Finally, we warn of the risks arising from climate change on M. nigriceps, because, if the change scenarios are confirmed, the range of suitability for the spe- cies studied here, which is currently ~ 82,027km2, may suffer losses of 30.4% - 85.11%. Of the total predicted, only 7.25% in fact are protected in protected areas, which makes urgent actions essential to minimize the effects of climate change, as well as the creation of management and recovery strategies for areas that have been converted into pastures so that we can preserve both M. nigriceps and other species in the community that co-occur with it. Supporting information S1 File. (DOC) Acknowledgments To Dr Manoel dos Santos-Filho for permission to use the collection in the Unemat Laborato´rio de Mastozoologia. To Thatiane M. da Costa, Carlos A. Tuyama and Lucas S. Souza for field
assistance. To Stephen D. Nash for allowing the use of an illustration copyrighted by 2020 Ste- phen D. Nash/IUCN SSC Primate Specialist Group. Author Contributions Conceptualization: Alme´rio Caˆmara Gusmão, João Carlos Pires-Oliveira, Adrian A. Barnett. Formal analysis: Alme´rio Caˆmara Gusmão, João Carlos Pires-Oliveira, Adrian A. Barnett. PLOS ONE Modeling of Mico nigriceps PLOS ONE | https://doi.org/10.1371/journal.pone.0256270 September 7, 2021 11 / 14
Investigation: Alme´rio Caˆmara Gusmão. Methodology: Alme´rio Caˆmara Gusmão, Joˆine Cariele Evangelista-Vale, João Carlos Pires-O- liveira, Adrian A. Barnett, Odair Diogo da Silva. References 1. IPCC. Climate change: Synthesis report. Team CW, Pachauri R., Reisinger A, editors. Geneva: IPCC; 2007. 2. Molinos JG, Poloczanska ES, Olden JD, Lawler JJ, Burrows MT. Biogeographical shifts and climate change. Encyclopedia of the Anthropocene. Elsevier Inc.; 2017. https://doi.org/10.1016/B978-0-12- 809665-9.09814–1 3. Arau´jo MB, Alagador D, Cabeza M, Nogue´ s-Bravo D, Thuiller W. Climate change threatens European conservation areas. Ecol Lett. 2011; 14: 484–492. https://doi.org/10.1111/j.1461-0248.2011.01610.x PMID: 21447141 4. Thuiller W, Arau´ jo MB, Pearson RG, Whittaker RJ, Brotons L, Lavorel S. Uncertainty in predictions of extinction risk. Nature. 2004; 430: 34–34. https://doi.org/10.1038/nature02716 PMID: 15237465 5. Zwiener VP, Lira-Noriega A, Grady CJ, Padial AA, Vitule JRSS. Climate change as a driver of biotic homogenization of woody plants in the Atlantic Forest. Glob Ecol Biogeogr. 2018; 27: 298–309. https:// doi.org/10.1111/geb.12695 6. Coe MT, Marthews TR, Costa MH, Galbraith DR, Greenglass NL, Imbuzeiro HMA, et al. Deforestation and climate feedbacks threaten the ecological integrity of south-southeastern Amazonia. Philos Trans R Soc B Biol Sci. 2013; 368: 1–9. https://doi.org/10.1098/rstb.2012.0155 PMID: 23610166 7. Whittaker RJ, Arau´jo MB, Jepson P, Ladle RJ, Watson JEM, Willis KJ. Conservation Biogeography:
assessment and prospect. Divers Distrib. 2005; 11: 3–23. https://doi.org/10.1111/j.1366-9516.2005. 00143.x 8. Bini LM, Diniz-Filho JAF, Rangel TFLVB, Bastos RP, Pinto MP. Challenging Wallacean and Linnean shortfalls: knowledge gradients and conservation planning in a biodiversity hotspot. Divers <html_ent glyph = "@amp;" ascii = "&"/> Distrib. 2006; 12: 475–482. https://doi.org/10.1111/j.1366-9516.2006. 00286.x 9. Siqueira MF de, Durigan G, de Marco Ju´ nior P, Peterson AT. Something from nothing: Using landscape similarity and ecological niche modeling to find rare plant species. J Nat Conserv. 2009; 17: 25–32. https://doi.org/10.1016/j.jnc.2008.11.001 10. Hortal J, de Bello F, Diniz-Filho JAF, et al (2015) Sete deficiências que afetam o conhecimento em larga escala da biodiversidade. Annu Rev Ecol Evol Syst 46: 523–549. https://doi.org/10.1146/ annurev-ecolsys-112414-054400 11. Ferrari SF, Lopes MA. New data on the distribution of primates in the region of the Jiparana and Madeira River in Amazonas and Rondoˆnia, Brazil. Goeldiana Zool. 1992; 11:2–12. 12. Vivo M. On some monkeys from Rondoˆ nia, Brazil (Primates: Callitrichidae, Cebidae). Pape´ is Avulsos de Zoologia, Museu de Zoologia da Universidade de São Paulo. 1985; 36:103–110. 13. Alperin R. Callithrix argentata (Linnaeus, 1771): Considerac¸ões taxonoˆmicas e descric¸ão de subespe´ - cie nova. Boletim do Museu Paraense Emı´lio Goeldi, Se´ rie Zoologia. 1993; 9:317–328. 14. Mittermeier RA, Schwarz M, Ayres JM. A new species of marmoset, genus Callithrix Erxleben, 1777
(Callitrichidae, Primates) from the Rio Maue´ s region, state of Amazonas, Central Brazilian Amazonia. Goeldiana Zoologia. 1992; 14:1–17. 15. Van Roosmalen M, van Roosmalen T, Mittermeier RA, Fonseca GAB. A new and distinctive species of marmoset (Callitrichidae, Primates) from the lower Rio Aripuanã, state of Amazonas, central Brazilian Amazonia. Goeldiana Zoologia. 1998; 22:1–27. 16. Cavalcante T, Gusmaão AC, Ferrari SF. Unexpected diversity: the potential role of privately-owned for- est remnants in the conservation of the primates of the highly-impacted Rondoˆnia center of endemism, southwestern Brazilian Amazonia. Neotrop Primates. 2018; 24:82–85 17. Muniz CC, Ro¨he F. Avaliac¸ão do Risco de Extinc¸ão de Mico nigriceps (Ferrari & Lopes, 1992) no Brasil. 2012. 18. Rajão R, Soares-Filho B, Nunes S, Bo¨rner J, Machado L, Assis D, et al. The rotter apples of Brazil’s agrobusiness. Science. 2020; 369(6501): 246. https://doi.org/10.1126/science.aba6646 PMID: 32675358 19. Perrig PL, Lambertucci SA, Cruz J, Alarco´ n PAE, Plaza PI, Middleton AD, et al. Identifying conservation priority areas for the Andean condor in southern South America. Biol Conserv. 2020; 243: 108494. https://doi.org/10.1016/j.biocon.2020.108494 PLOS ONE Modeling of Mico nigriceps PLOS ONE | https://doi.org/10.1371/journal.pone.0256270 September 7, 2021 12 / 14
20. Prieto-Torres DA, Nori J, Rojas-Soto OR. Identifying priority conservation areas for birds associated to endangered Neotropical dry forests. Biol Conserv. 2018; 228: 205–214. https://doi.org/10.1016/j. biocon.2018.10.025 21. Martı´nez-Meyer E, Peterson AT, Servı´n JI, Kiff LF. Ecological niche modelling and prioritizing areas for species reintroductions. Oryx. 2006; 40: 411–418. https://doi.org/10.1017/S0030605306001360 22. Projeto RadamBrasil. Geologia, geomorfologia, pedologia, vegetac¸ão e uso potencial da terra. Depar- tamento Nacional de Produc¸ão Mineral. Brası´lia, Distrito Federal. 1978; 1–34. 23. Alvares CA, Stape JL, Sentelhas PC, Gonc¸alves JLM. Sparovek G. 2014. Ko¨ppen’s climate classifica- tion map for Brazil. Meteorol. Z. 2014; 22:711–728. https://doi.org/10.1127/0941-2948/2013/0507 24. Ferrari SF, Sena L, Schneider MPC, Silva-Ju´ nior JS. Rondon’s marmoset, Mico rondoni sp. n., from Southwestern Brazilian Amazonia. International Journal of Primatology. 2010; 31:693–714. https://doi. org/10.1007/s10764-010-9422-6 25. Gusmão AC, Souza LS, Costa TM, Velten T, Santos-Filho M, Ferronato M. Formac¸ão de grupo misto entre Mico rondoni (Ferrari et al., 2010), Saguinus weddelli (Devile, 1849) e M. melanurus (E´ Geoffroy, 1812) na Resex do Rio Cauta´rio. Rondoˆnia, Brasil. Neotropical Primates. 2015; 22(1):50–52. 26. Ferrari S. F. A fauna de mamı´feros não voadores da Reserva Biolo´ gica Trac¸adal-RO. Relato´ rio Te´ c- nico não publicado, Governo do estado de Rondoˆnia. Porto Velho, DC. 2001.
27. Oliveira R. Beta diversidade de mamı´feros na bacia do rio Guapore´ , Amazoˆ nia, sudoeste de Mato Grosso, Brasil. Dissertac¸ão de mestrado. Universidade do Estado de Mato Grosso. Ca´ceres, Mato Grosso, Brasil. 2013. 28. Garbino GST. Terra. The taxonomic status of Mico marcai (Alperin 1993) and Mico manicorensis (van Roosmalen et al. 2000) (Cebidae, Callitrichinae) from southwestern Brazilian Amazonia. International Journal of Primatology, 2014, 35.2: 529–546. https://doi.org/10.1007/s10764-014-9766-4 29. Barve N, Barve V, Jime´nez-Valverde A, Lira-Noriega A, Maher SP, Peterson AT, et al. The crucial role of the accessible area in ecological niche modeling and species distribution modeling. Ecol Modell. 2011; 222: 1810–1819. https://doi.org/10.1016/j.ecolmodel.2011.02.011 30. Cooper JC, Sobero´n J. Creating individual accessible area hypotheses improves stacked species distri- bution model performance. Glob Ecol Biogeogr. 2018; 27: 156–165. https://doi.org/10.1111/geb.12678 31. Olson DM, Dinerstein E, Wikramanayake ED, Burgess ND, Powell GVN, Underwood EC, et al. Terres- trial Ecoregions of the World: A New Map of Life on Earth. Bioscience. 2001; 51: 933. https://doi.org/10. 1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2 32. Fick SE, Hijmans RJ. WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas. Int J Climatol. 2017; 37: 4302–4315. https://doi.org/10.1002/joc.5086 33. Barve N, Barve V. ENMGadgets: Tools for Pre and Post Processing in ENM Workflow. 2018. Zwiener
VP, Lira-Noriega A, Grady CJ, Padial AA, Vitule JR. Climate change as a driver of biotic homogeniza- tion of woody plants in the Atlantic Forest. Glob Ecol Biogeogr. 2018; 27:298–309. https://doi.org/10. 1111/geb.12695 34. Resende G, Sobral-Souza T., Culot L. Integrating climate and landscape models to prioritize areas and conservation strategies for an endangered arboreal. A. J. Primatology. 2020;1–9. https://doi.org/10. 1002/ajp.23202 PMID: 33040387 35. Zuquim G, Costa FRC, Tuomisto H, Moulatlet GM. The importance of soils in predicting the future of plant habitat suitability in a tropical forest. Plant Soil. 2019;1–20. https://doi.org/10.1007/s11104-018-03915-9 36. Velazco SJE, Galvão F, Villalobos F, De Marco Ju´ nior P. Using worldwide edaphic data to model plant species niches: An assessment at a continental extent. PLoS One. 2017; 12.10: e0186025. https://doi. org/10.1371/journal.pone.0186025 PMID: 29049298 37. Figueiredo FOG, Zuquim G, Tuomisto H, Balslev H, Costa FR. Beyond climate control on species range: The importance of soil data to predict distribution of Amazonian plant species. J Biogeogr. 2018; 45:190–200. https://doi.org/10.1111/jbi.13104 38. Thuiller W, Georges D, Engler R, Breiner F. biomod2: Ensemble Platform for Species Distribution Modeling. 2019. 39. Allouche O, Tsoar A, Kadmon R. Assessing the accuracy of species distribution models: Prevalence, kappa and the true skill statistic (TSS). J Appl Ecol. 2006; 43:1223–1232. https://doi.org/10.1111/j. 1365-2664.2006.01214.x
40. Pearson RG, Raxworthy C, Nakamura M, Peterson AT. Predicting species distributions from small numbers of occurrence records: a test case using cryptic geckos in Madagascar. J. of Bioeography. 2007; 34(1):102–117. https://doi.org/10.1111/j.1365-2699.2006.01594.x 41. Barbet-Massin M, Jiguet F, Albert CH, Thuiller W. Selecting pseudo-absences for species distribution models: How, where and how many? Methods Ecol Evol. 2012; 3:327–338. https://doi.org/10.1111/j. 2041-210X.2011.00172.x PLOS ONE Modeling of Mico nigriceps PLOS ONE | https://doi.org/10.1371/journal.pone.0256270 September 7, 2021 13 / 14
42. Liu C, Berry PM, Dawson TP, Pearson RG. Selecting thresholds of ocurrence in the prediction of spe- cies distributions. Ecography (Cop). 2005; 28: 385–393. https://doi.org/10.1111/j.0906-7590.2005. 03957.x 43. Gomes VH, Vieira IC, Salomão RP, Steege TH. Amazonian tree species threatened by deforestation and climate change. Nature Climate Change. 2019; 9(7):547–553. https://doi.org/10.1038/s41558- 019-0500-2 44. Carnicer C, Eisenlohr PV, Ja´como ATA, Silveira L, Alves GB, Torres NM, et al,. Running to the moun- tains: mammal species will find potentially suitable areas on the Andes. 2020. Biodivers Conserv 29, 1855–1869. https://doi.org/10.1007/s10531-020-01951-5 45. Filho BS, Nepstad DC, Curran LM, Cerqueira GC, Garcia RA, Ramos CA, et al. Modelling conservation in the Amazon basin. Nature; 2006. 440, 520–523. https://doi.org/10.1038/nature04389 PMID: 16554817 46. Rabelo RM, Goncalves JR, Silva FE, Rocha DG, Canale GR, Bernardo CSS, et al. Predicted distribu- tion and habitat loss for the Endangered black-faced black spider monkey (Ateles chamek) in the Ama- zon. Oryx. 2020; 54.5:699–705. https://doi.org/10.1017/S0030605318000522 47. Cavalcante T, Jesus ASJ, Rabelo R, Messias MR, Valecchi J, Ferraz D, et al. Niche overlap between two sympatric frugivorous Neotropical primates: improving ecological niche models using closely- related taxa. Biodiversity and Conservation. 2020; 1–15. https://doi.org/10.1007/s10531-020-01997-5 (016789().,-lV)(0123456789().,-volV) 48. Jime´nez-Muñoz JC, Sobrino JA, Mattar C, Malhi Y. Spatial and temporal patterns of the recent warming
of the Amazon forest. J. Geophys. Res. Atmos. 2013; 118:5204–5215. https://doi.org/10.1002/jgrd. 50456 49. Rezende GC, Sobral-Souza T, Culot L. Integrating climate and landscape models to prioritize areas and conservation strategies for an andagered arboreal. International Journal of Primatology. 2020; https://doi.org/10.1002/ajp.23202 PMID: 33040387 50. Guisan A, Tingley R, Baumgartner JB, Naujokaitis-Lewis I, Sutcliffe PR, Tulloch AI., et al. Predicting species distributions for conservation decisions. Ecology letters. 2013; 16(12): 1424–1435. https://doi. org/10.1111/ele.12189 PMID: 24134332 51. Ceballos G, Ehrlich PR, Dirzo R. Biological annihilation via the ongoing sixth mass extinction signaled by vertebrate population losses and declines. Proceedings of the national academy of sciences. 2017; 114(30): E6089–E6096. https://doi.org/10.1073/pnas.1704949114 PMID: 28696295 52. INPE, Instituto Nacional de Pesquisas Espaciais. A taxa consolidada de desmatamento por corte raso para os nove estados da Amazoˆnia Legal (AC, AM, AP, MA, MT, PA, RO, RR e TO) em 2019 e´ de 10.129 km2. INPE, São Jose´ dos Campos, SP. 2020a. Disponı´vel em: <http://www.inpe.br/noticias/ noticia.php?Cod_Noticia=5465>. Acesso em: 01 de nov. de 2020. 53. Ferrante L, Fearnside PM. Brazil’s new president and ‘ruralists’ threaten Amazonia’s environment, tradi- tional peoples and the global climate. Environmental Conservation. 2019; 46(4): 261–263. https://doi. org/10.1017/S0376892919000213 54. Bellard C, Bertelsmeier C, Leadley P, Thuiller W, Courchamp F. (2012). Impacts of climate change on
the future of biodiversity. Ecology letters. 2012; 15(4): 365–377. https://doi.org/10.1111/j.1461-0248. 2011.01736.x PMID: 22257223 55. Bebber DP. The Brazilian Amazon Protected Area Network was largely unaffected by recent satellite- detectable fires. bioRxiv. 2019; 784975. https://doi.org/10.1101/784975 56. Beaudrot L, Kroets K, Azevedo-Loayza P, Breuer IA, Fletcher C, Jansen PA, et al. Limited Carbon and biodiversity co-benefits for tropical forest mammals and bird. 2015; https://doi.org/10.1890/15-0935 PLOS ONE Modeling of Mico nigriceps PLOS ONE | https://doi.org/10.1371/journal.pone.0256270 September 7, 2021 14 / 14