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Hidden biodiversity in Neotropical streams: DNA barcoding uncovers high endemicity of freshwater macroinvertebrates at small spatial scales

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S3 Fig. Phylogenetic tree determined by the Maximum Likelihood (ML). Data represent cox1 sequences obtained from 224 freshwater macroinvertebrates collected within the Panama Canal Watershed. The numbers on the branches show nodal support. (PNG) S1 Table. Molecular and taxonomic diversity of freshwater macroinvertebrates within the Panama Canal Watershed. For each specimen, we show a taxonomic group (i.e., order, fam- ily, and genus), molecular species identity (MOTUs: based on ABGD and GMYC), Haplotype identity, Genbank accession number, and sampling site. Sites are Trinidad (TRI), Frijolito (FTO), Frijoles (FES) and Indio (IND). (XLSX) Acknowledgments We dedicate this study to our friend Ruth G. Reina. Her passion for tropical freshwater biology served as an inspiration to this work. Logistical support was provided by the Smithsonian Tropical Research Institute. Field assistance was provided by Celestino Martı´nez, Nohelys Alvarado, Carlos Nieto, and De´bora Delgado. Diana Sharpe provided valuable comments on an earlier version of the manuscript. We thank editor Dr. Michael A. Chadwick and four anonymous reviewers for providing feedback on our manuscript. Author Contributions Conceptualization: Luis F. De Leo´n. Data curation: Luis F. De Leo´n, Aydee´ Cornejo, Ronnie G. Gavila´n, Celestino Aguilar. Formal analysis: Luis F. De Leo´n, Ronnie G. Gavila´n, Celestino Aguilar. Funding acquisition: Luis F. De Leo´n. Investigation: Luis F. De Leo´n, Aydee´ Cornejo, Ronnie G. Gavila´n, Celestino Aguilar. Methodology: Luis F. De Leo´n, Aydee´ Cornejo, Ronnie G. Gavila´n.

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Resources: Aydee´ Cornejo, Ronnie G. Gavila´n. Supervision: Luis F. De Leo´n, Aydee´ Cornejo. Writing – original draft: Luis F. De Leo´n. Writing – review & editing: Luis F. De Leo´n, Celestino Aguilar. References 1. Wallace JB, Webster JR. The role of macroinvertebrates in stream ecosystem function. Annu Rev Ento- mol. 1996; 41: 115–139. https://doi.org/10.1146/annurev.en.41.010196.000555 PMID: 15012327 2. Covich AP, Palmer MA, Crowl TA. The Role of Benthic Invertebrate Species in Freshwater Ecosystems: Zoobenthic species influence energy flows and nutrient cycling. Bioscience. 1999; 49: 119–127. 3. Covich AP, Austen MC, BA¨ Rlocher F, Chauvet E, Cardinale BJ, Biles CL, et al. The Role of Biodiversity in the Functioning of Freshwater and Marine Benthic Ecosystems. Bioscience. 2004; 54: 767–775. 4. Al-Shami SA, Rawi CSM, Ahmad AH, Madrus MR, AL Mutairi K. Importance of regional diversity and environmental conditions on local species richness of aquatic macro-invertebrates in tropical forested streams. J Trop Ecol. 2014; 30: 335–346. 5. Pe´ rez GR. Guı´a para el estudio de los macroinvertebrados acua´ ticos del Departamento de Antioquia. Fondo para la Proteccio´ n del Medio Ambiente “Jose´ Celestino Mutis”; 1988. PLOS ONE Hidden biodiversity in Neotropical streams PLOS ONE | https://doi.org/10.1371/journal.pone.0231683 August 7, 2020 10 / 13