Molecular diet studies of water mites reveal prey biodiversity
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8. Smith IM, Cook DR, Smith BP. Ch. 15, Water mites and other arachnids. In: Thorpe J, Covich A, editors. Ecology and classification of North American freshwater invertebrates 3rd Edition Waltham, Massa- chusetts: Academic Press; 2010. p. pp. 485–586. 9. Matveev VF, Martinez CC. Can water mites control populations of planktonic cladocera? Hydrobiologia. 1990; 198:227–31. https://doi.org/10.1007/bf00048637 WOS:A1990DR42200020. PLOS ONE Prey DNA diversity in water mites PLOS ONE | https://doi.org/10.1371/journal.pone.0254598 July 29, 2021 16 / 18
10. Sanchez MI, Coccia C, Valdecasas AG, Boyero L, Green AJ. Parasitism by water mites in native and exotic Corixidae: Are mites limiting the invasion of the water boatman Trichocorixa verticalis (Fieber, 1851)? Journal of Insect Conservation. 2015; 19(3):433–47. https://doi.org/10.1007/s10841-015-9764- 7 WOS:000356161600001. 11. Smith IM, Oliver DR. Review of parasitic associations of larval water mites (Acari, Parasitengona, Hydrachnida) with insect hosts. Canadian Entomologist. 1986; 118(5):407–72. https://doi.org/10.4039/ Ent118407-5 WOS:A1986C523900002. 12. Vasquez AAK B.A.; Ram J.L.; Miller C.J. The Biodiversity of Water Mites That Prey on and Parasitize Mosquitoes. Diversity. 2020; 12(226):6. 13. Hamback PA, Weingartner E, Dalen L, Wirta H, Roslin T. Spatial subsidies in spider diets vary with shoreline structure: Complementary evidence from molecular diet analysis and stable isotopes. Ecology and Evolution. 2016; 6(23):8431–9. https://doi.org/10.1002/ece3.2536 WOS:000392062100009. PMID: 28031795 14. Pompanon F, Deagle BE, Symondson WO, Brown DS, Jarman SN, Taberlet P. Who is eating what: diet assessment using next generation sequencing. Mol Ecol. 2012; 21(8):1931–50. Epub 2011/12/17. https://doi.org/10.1111/j.1365-294X.2011.05403.x PMID: 22171763 15. Leray M, Yang JY, Meyer CP, Mills SC, Agudelo N, Ranwez V, et al. A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents. Front Zool. 2013; 10:34. Epub 2013/06/19. https://doi.org/10.
1186/1742-9994-10-34 PMID: 23767809; PubMed Central PMCID: PMC3686579. 16. Perner J, Provaznik J, Schrenkova J, Urbanova V, Ribeiro JM, Kopacek P. RNA-seq analyses of the midgut from blood- and serum-fed Ixodes ricinus ticks. Sci Rep. 2016; 6:36695. Epub 2016/11/09. https://doi.org/10.1038/srep36695 PMID: 27824139; PubMed Central PMCID: PMC5099782. 17. Lefort M-C, Beggs JR, Glare TR, Saunders TE, Doyle EJ, Boyer S. A molecular approach to study Hymenoptera diets using wasp nests. 2020; 63. https://doi.org/10.3897/neobiota.63.58640%JNeoBiota 18. Martin P, Koester M, Schynawa L, Gergs R. First detection of prey DNA in Hygrobates fluviatilis (Hydrachnidia, Acari): a new approach for determining predator-prey relationships in water mites. Exp Appl Acarol. 2015; 67(3):373–80. https://doi.org/10.1007/s10493-015-9956-6 WOS:000362321000004. PMID: 26246189 19. Vasquez AA. Digestive composition and physiology of water mites. PhD dissertation, Wayne State Uni- versity, https://searchproquestcom/openview/cdfdde63e1641079a0c8507cd6d57980/1pdf?pq- origsite=gscholar&cbl=18750&diss=y (accessed June 30, 2018). 2017. 20. Vasquez AA, Carmona-Galindo V, Qazazi MS, Walker XN, Ram JL. Water mite assemblages reveal diverse genera, novel DNA barcodes and transitional periods of intermediate disturbance. Exp Appl Acarol. 2020; 80(4):491–507. Epub 2020/03/08. https://doi.org/10.1007/s10493-020-00476-4 PMID: 32144638. 21. Gerecke R. The water mites (Acari, Hydrachnidia) of a little disturbed forest stream in southwest Ger-
many—a study on seasonality and habitat preference, with remarks on diversity patterns in different geographical areas. Bernini F, Nannelli R, Nuzaci G, DeLillo E, editors2002. 69–89 p. 22. Schmidt HW, Muller K. Daily and annual periodicity of species Lebertia (Hydrachnellae Acari). Oikos. 1967; 18(2):357–&. https://doi.org/10.2307/3565112 WOS:A1967A474000017. 23. Hajibabaei M, Janzen DH, Burns JM, Hallwachs W, Hebert PDN. DNA barcodes distinguish species of tropical Lepidoptera. Proceedings of the National Academy of Sciences of the United States of America. 2006; 103(4):968–71. https://doi.org/10.1073/pnas.0510466103 WOS:000234938300025. PMID: 16418261 24. Rougerie R, Smith MA, Fernandez-Triana J, Lopez-Vaamonde C, Ratnasingham S, Hebert PDN. Molecular analysis of parasitoid linkages (MAPL): gut contents of adult parasitoid wasps reveal larval host. Molecular Ecology. 2011; 20(1):179–86. https://doi.org/10.1111/j.1365-294X.2010.04918.x WOS:000285396000015. PMID: 21083857 25. Folmer O, Black M, Hoeh W, Lutz RA, Vrijenhoek RC. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology. 1994; 3(5):294–9. PMID: 7881515 26. Magoc T, Salzberg S. FLASH: Fast length adjustment of short reads to improve genome assemblies. Bioinformatics. 2011; 27(21):2957–63. https://doi.org/10.1093/bioinformatics/btr507 PMID: 21903629 27. Li WZ, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide
sequences. Bioinformatics. 2006; 22(13):1658–9. https://doi.org/10.1093/bioinformatics/btl158 WOS:000238905700017. PMID: 16731699 28. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. Molecular Evolutionary Genetics Analysis ver- sion 6.0. Molecular Biology and Evolution. 2013; 30:2725–9. https://doi.org/10.1093/molbev/mst197 PMID: 24132122 PLOS ONE Prey DNA diversity in water mites PLOS ONE | https://doi.org/10.1371/journal.pone.0254598 July 29, 2021 17 / 18
29. Hebert PDN, Cywinska A, Ball SL, DeWaard JR. Biological identifications through DNA barcodes. Pro- ceedings of the Royal Society of London Series B-Biological Sciences. 2003; 270(1512):313–21. WOS:000181064200013. https://doi.org/10.1098/rspb.2002.2218 PMID: 12614582 30. Gerecke R. Revisional studies on the European species of the water mite genus Lebertia NEUMAN, 1880 (Acari: Hydrachnidia: Lebertiidae). Abhandlungen der Senckenbergischen Naturforschenden Gesellschaft. 2009; 566:1–141. BCI:BCI200900481354. 31. Yuen KK. 2-sample trimmed t for unequal population variances. Biometrika. 1974; 61(1):165–70. https://doi.org/10.2307/2334299 WOS:A1974S717000020. 32. Hirsch RM, Slack JR. A nonparametric trend test for seasonal data with serial dependence. Water Resources Research. 1984; 20(6): 727–32. https://doi.org/10.1029/WR020i006p00727 WOS: A1984SX55700012. 33. Olmos-Pe´ rez L, Roura A´ , Pierce GJ, Boyer S, Gonza´ lez A´ F. Diet Composition and Variability of Wild Octopus vulgaris and Alloteuthis media (Cephalopoda) Paralarvae: a Metagenomic Approach. 2017; 8 (321). https://doi.org/10.3389/fphys.2017.00321 PMID: 28596735 34. Pozojevic I, Jursic L, Vuckovic N, Doric V, Gottstein S, Ternjej I, et al. Is the spatial distribution of lentic water mite assemblages (Acari: Hydrachnidia) governed by prey availability? Experimental and Applied Acarology. 2019; 77(4):487–510. https://doi.org/10.1007/s10493-019-00362-8 WOS:000468592300003. PMID: 31089977 35. Pozojević I. Prey abundance supporting unusual water mite (Acari: Hydrachnidia) community in a subla-
custrine spring and tributary river. Acta Biologica. 2018; 25:69–75. https://doi.org/10.18276/ab.2018. 25–06 36. Failla AJ, Vasquez AA, Hudson P, Fujimoto M, Ram JL. Morphological identification and COI barcodes of adult flies help determine species identities of chironomid larvae (Diptera, Chironomidae). Bull Ento- mol Res. 2016; 106(1):34–46. Epub 2015/06/16. https://doi.org/10.1017/S0007485315000486 PMID: 26072670. 37. David Evans Walter, Proctor HC. Mites: Ecology, Evolution and Behaviour Life at a Microscale. 2 ed2013. 38. Erseus C, Envall I, De Wit P, Gustaysson LM. Molecular data reveal a tropical freshwater origin of Naidi- nae (Annelida, Clitellata, Naididae). Molecular Phylogenetics and Evolution. 2017; 115:115–27. https:// doi.org/10.1016/j.ympev.2017.07.016 WOS:000409156200013. PMID: 28743643 39. Kotov AA, Karabanov DP, Bekker EI, Neretina TV, Taylor DJ. Phylogeography of the Chydorus sphaeri- cus Group (Cladocera: Chydoridae) in the Northern Palearctic. Plos One. 2016; 11(12). https://doi.org/ 10.1371/journal.pone.0168711 WOS:000392842600092. PMID: 27992559 40. Ruiz MO, Walker ED, Foster ES, Haramis LD, Kitron UD. Association of West Nile virus illness and urban landscapes in Chicago and Detroit. Int J Health Geogr. 2007; 6:11. https://doi.org/10.1186/1476- 072X-6-11 WOS:000258120300002. PMID: 17362510 41. Trekels H, Vanschoenwinkel B. Both local presence and regional distribution of predator cues modulate prey colonisation in pond landscapes. Ecol Lett. 2019; 22(1):89–97. https://doi.org/10.1111/ele.13170 WOS:000453562900008. PMID: 30370574
42. Marshall JF. The British Mosquitoes. London: British Museum of Natural History; 1938. xi + 441 p. 43. Varney RL, Noor MAF. The scuttle fly. Current Biology. 2010; 20(11):R466–R7. https://doi.org/10.1016/ j.cub.2010.03.043 WOS:000278662500008. PMID: 20541488 44. Proctor HC. Can freshwater mites act as forensic tools? Exp Appl Acarol. 2009; 49(1–2):161–5. https:// doi.org/10.1007/s10493-009-9273-z WOS:000268544100012. PMID: 19513807 45. Goldschmidt T, Helson JE, Williams DD. Ecology of water mite assemblages in Panama—First data on water mites (Acari, Hydrachnidia) as bioindicators in the assessment of biological integrity of neotropical streams. Limnologica. 2016; 59:63–77. https://doi.org/10.1016/j.limno.2016.03.007 WOS:000380418300006. 46. Goldschmidt T. Water mites (Acari, Hydrachnidia): powerful but widely neglected bioindicators—a review. Neotropical Biodiversity. 2016; 2(1):12–25. ZOOREC:ZOOR15412081558. 47. Wiecek M, Martin P, Gabka M. Distribution patterns and environmental correlates of water mites (Hydrachnidia, Acari) in peatland microhabitats. Experimental and Applied Acarology. 2013; 61(2):147– 60. https://doi.org/10.1007/s10493-013-9692-8 WOS:000323662300001. PMID: 23564226 48. Smith BP, Hagman J. Experimental evidence for a female sex pheromone in Arrenurus manubriator (Acari: Hydrachnida; Arrenuridae). Exp Appl Acarol. 2002; 27(4):257–63. https://doi.org/10.1023/ a:1023328428716 WOS:000182273200001. PMID: 12797400 49. Trebitz AS, Hoffman JC, Grant GW, Billehus TM, Pilgrim EM. Potential for DNA-based identification of
Great Lakes fauna: match and mismatch between taxa inventories and DNA barcode libraries. Scientific Reports. 2015; 5:Article number 12162, 11 pp. https://doi.org/10.1038/srep12162 WOS:000358303900001. PMID: 26199185 PLOS ONE Prey DNA diversity in water mites PLOS ONE | https://doi.org/10.1371/journal.pone.0254598 July 29, 2021 18 / 18