Floral hosts of leaf-cutter bees (Megachilidae) in a biodiversity hotspot revealed by pollen DNA metabarcoding of historic specimens
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28. Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bio- informatics, 30, btu170. https://doi.org/10.1093/bioinformatics/btu170 PMID: 24695404 29. Caporaso JG, Kuczynski J, Stombaugh J, et al. (2010) QIIME allows analysis of high-throughput com- munity sequencing data. Nature Methods, 7, 335–336. https://doi.org/10.1038/nmeth.f.303 PMID: 20383131 30. Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology, 73, 5261–5267. https://doi.org/10.1128/AEM.00062-07 PMID: 17586664 31. Shokralla S, Spall JL, Gibson JF, Hajibabaei M (2012) Next-generation sequencing technologies for environmental DNA research. Molecular Ecology, 21, 1794–1805. https://doi.org/10.1111/j.1365-294X. 2012.05538.x PMID: 22486820 32. Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics, 26, 2460–2461. https://doi.org/10.1093/bioinformatics/btq461 PMID: 20709691 33. Oksanen J, Blanchet FG, Kindt R, et al. (2016) vegan: Community Ecology Package. R package ver- sion 2.3–4. 34. R Core Team (2016) R: A Language and Environment for Statistical Computing. R Foundation for Sta- tistical Computing, Vienna, Austria. 35. Germishuizen G, Meyer NL, National Botanical Institute (South Africa) (Eds.) (2003) Plants of southern Africa: an annotated checklist. National Botanical Institute, Pretoria. 36. Low AB, Rebelo AG (Eds.) (1996) Vegetation of South Africa, Lesotho and Swaziland. Department of
Environmental Affairs and Tourism, Pretoria. 37. Eardley CD (2012) A taxonomic revision of the southern African species of dauber bees in the genus Megachile Latreille (Apoidea:Megachilidae). Zootaxa, 3460, 1–139. 38. Eardley C (2013) A taxonomic revision of the southern African leaf-cutter bees, Megachile Latreille sensu stricto and Heriadopsis Cockerell (Hymenoptera: Apoidea: Megachilidae). Zootaxa, 3601. https://doi.org/10.11646/zootaxa.3601.1.1 PMID: 24614086 39. Gess SK, Gess FW (2014) Wasps and bees in Southern Africa. South African National Biodiversity Institute, Pretoria. 40. Eardley CD, Urban R (2010) Catalogue of Afrotropical bees (Hymenoptera: Apoidea: Apiformes). Zoo- taxa 2455:1–548. 41. Hammer Ø, Harper DAT, Ryan PD (2001) PAST: Paleontological Statistics software package for education. 42. Steyn HM, Bester SP, Bezuidenhout H (2013) An updated plant checklist for Tankwa Karoo National Park, South Africa. South African Journal of Botany, 88, 247–251. 43. Snijman DA (Ed.) (2013) Plants of the Greater Cape floristic region, Vol. 2: the Extra Cape flora. South African National Biodiversity Institute, Pretoria. 44. Wheeler AD (2010) Impacts of degradation on critically endangered Oudtshoorn Gannaveld. University of the Western Cape. 45. Cowling RM, Esler KJ, Rundel PW (1999) Namaqualand, South Africa–an overview of a unique winter- rainfall desert ecosystem. Plant Ecology, 142, 3–21. 46. Bogdan AV (1962) Grass pollination by bees in Kenya. Proceedings of the Linnean Society of London, 173, 57–60.
47. Soderstrom TR, Calderon CE (1971) Insect pollination in tropical rain forest grasses. Biotropica, 3, 1– 16. 48. Pojar J (1973) Pollination of typically anemophilous salt marsh plants by bumble bees, Bombus terricola occidentalis Grne. American Midland Naturalist, 89, 448–451. 49. Koshy KC, Harikumar D, Narendran TC (2001) Insect visits to some bamboos of the Western Ghats, India. Current Science, 81, 833–838. 50. Koshy KC, Harikumar D (2001) Reproductive biology of Ochlandra scriptoria, an endemic reed bamboo of the Western Ghats, India. Bamboo Science & Culture, 15, 1–7. 51. Valentini A, Miquel C, Taberlet P (2010) DNA barcoding for honey biodiversity. Diversity, 2, 610–617. 52. Hawkins J, de Vere N, Griffith A, et al. (2015) Using DNA metabarcoding to identify the floral composi- tion of honey: A new tool for investigating honey bee foraging preferences. PLoS ONE, 10, e0134735. https://doi.org/10.1371/journal.pone.0134735 PMID: 26308362 53. Scheper J, Reemer M, van Kats R, et al. (2014) Museum specimens reveal loss of pollen host plants as key factor driving wild bee decline in The Netherlands. Proceedings of the National Academy of Sci- ences, 111, 17552–17557. https://doi.org/10.1073/pnas.1412973111 PMID: 25422416 PLOS ONE Floral hosts of Megachilidae revealed by metabarcoding PLOS ONE | https://doi.org/10.1371/journal.pone.0244973 January 21, 2021 16 / 16