Assessing the effects of agricultural intensification on natural habitats and biodiversity in Southern Amazonia

87. Alkimim A, Sparovek G, Clarke KC. Converting Brazil’s pastures to cropland: An alternative way to meet sugarcane demand and to spare forestlands. Applied Geography 2015; 62:75–84. 88. Laurance WF, Lovejoy TE, Vasconcelos HL, Bruna EM, Didham RK, Stouffer PC et al. Ecosystem decay of Amazonian forest fragments: A 22-year investigation. Conservation Biology 2002; 16 (3):605–18. 89. Haddad NM, Brudvig LA, Clobert J, Davies KF, Gonzalez A, Holt RD et al. Habitat fragmentation and its lasting impact on Earth’s ecosystems. Science Advances 2015; 1(2):e1500052. https://doi.org/10. 1126/sciadv.1500052 PMID: 26601154 90. Figueira JEC, Cintra R, Viana LR, Yamashita C. Spatial and temporal patterns of bird species diversity in the Pantanal of Mato Grosso, Brazil: Implications for conservation. Brazilian Journal of Biology 2006; 66(2A):393–404. https://doi.org/10.1590/s1519-69842006000300003 PMID: 16862292 91. Jenkins CN, Alves MAS, Uezu A, Vale MM. Patterns of Vertebrate Diversity and Protection in Brazil. PLOS ONE 2015; 10(12):e0145064. https://doi.org/10.1371/journal.pone.0145064 PMID: 26679348 92. Kwakkel JH, Walker WE, Haasnoot M. Coping with the Wickedness of Public Policy Problems: Approaches for Decision Making under Deep Uncertainty. J. Water Resour. Plann. Manage. 2016; 142(3):1816001. 93. Bland LM, Collen BEN, Orme CDL, Bielby JON. Predicting the conservation status of data-deficient species. Conservation Biology 2015; 29(1):250–9. https://doi.org/10.1111/cobi.12372 PMID: 25124400

94. Oliveira LJC, Costa MH, Soares-Filho BS, Coe MT. Large-scale expansion of agriculture in Amazonia may be a no-win scenario. Environmental Research Letters 2013; 8(2):24021. 95. Marengo JA, Chou SC, Kay G, Alves LM, Pesquero JF, Soares WR et al. Development of regional future climate change scenarios in South America using the Eta CPTEC/HadCM3 climate change pro- jections: Climatology and regional analyses for the Amazon, São Francisco and the Parana´ River basins. Climate Dynamics 2012; 38(9–10):1829–48. 96. Rosenzweig C, Elliott J, Deryng D, Ruane AC, Mu¨ ller C, Arneth A et al. Assessing agricultural risks of climate change in the 21st century in a global gridded crop model intercomparison. Proceedings of the National Academy of Sciences 2014; 111(9):3268–73. 97. Geiger F, Bengtsson J, Berendse F, Weisser WW, Emmerson M, Morales MB et al. Persistent nega- tive effects of pesticides on biodiversity and biological control potential on European farmland. Basic and Applied Ecology 2010; 11(2):97–105. 98. Schiesari L, Waichman A, Brock T, Adams C, Grillitsch B. Pesticide use and biodiversity conservation in the Amazonian agricultural frontier. Philosophical Transactions of the Royal Society B: Biological Sciences 2013; 368(1619):20120378. https://doi.org/10.1098/rstb.2012.0378 PMID: 23610177 99. Tscharntke T, Bata´ ry P, Clough Y, Kleijn D, Scherber C, Thies C et al. Combining biodiversity conser- vation with agricultural intensification. Land use intensification. Effects on agriculture, biodiversity and ecological processes, CSIRO Publishing: Australia 2012:7–15.

100. Emmerson M, Morales MB, Oñate JJ, Bata´ry P, Berendse F, Liira J et al. How Agricultural Intensifica- tion Affects Biodiversity and Ecosystem Services. In: Kordas R, Dumbrell AJ, Woodward G, editors. Large-scale ecology: Model systems to global perspectives / volume editor, Rebecca Kordas, Alex Dumbrell, Guy Woodward. Amsterdam: Academic Press; 2016. p. 43–97 (Advances in Ecological Research; vol. 55). 101. Kehoe L, Romero-Muñoz A, Polaina E, Estes L, Kreft H, Kuemmerle T. Biodiversity at risk under future cropland expansion and intensification. Nature Research Ecology & Evolution 2017; 1(8):1129–35. https://doi.org/10.1038/s41559-017-0234-3 PMID: 29046577 102. Herrero M, Thornton PK, Gerber P, Reid RS. Livestock, livelihoods and the environment: Understand- ing the trade-offs. Current Opinion in Environmental Sustainability 2009; 1(2):111–20. PLOS ONE Agricultural intensification effects on natural habitats and biodiversity PLOS ONE | https://doi.org/10.1371/journal.pone.0225914 November 25, 2020 21 / 21