Effects of future climate on coral-coral competition

35. Morgan KM, Perry CT, Smithers SG, Johnson JA, Daniel JJ. Evidence of extensive reef development and high coral cover in nearshore environments: implications for understanding coral adaptation in tur- bid settings. Scientific Reports. 2016; 6:29616. https://doi.org/10.1038/srep29616 PMID: 27432782 36. Chornesky EA. Induced development of sweeper tentacles on the reef coral Agaricia agaricites: a response to direct competition. The Biological Bulletin. 1983; 165(3):569–81. https://doi.org/10.2307/ 1541466 PMID: 29324010 37. Chornesky EA. Repeated Reversals During Spatial Competition Between Corals. Ecology. 1989; 70 (4):843–55. https://doi.org/10.2307/1941353 38. Connell JH, Hughes TE, Wallace CC, Tanner JE, Harms KE, Kerr AM. A long-term study of competition and diversity of corals. Ecol Monogr. 2004; 74(2):179–210. https://doi.org/10.1890/02-4043 39. Evensen NR, Edmunds PJ, Sakai K. Effects of pCO2 on spatial competition between the corals Monti- pora aequituberculata and Porites lutea. Mar Ecol Prog Ser. 2015; 541:123–34. 40. Evensen NR, Edmunds PJ. Effect of elevated pCO2 on competition between the scleractinian corals Galaxea fascicularis and Acropora hyacinthus. Journal of Experimental Marine Biology and Ecology. 2018; 500:12–7. https://doi.org/10.1016.j.jembe.2017.12.002 41. Horwitz R, Hoogenboom MO, Fine M. Spatial competition dynamics between reef corals under ocean acidification. Scientific Reports. 2017; 7. https://doi.org/10.1038/srep40288 PMID: 28067281

42. Burman SG, Aronson RB, van Woesik R. Biotic homogenization of coral assemblages along the Florida reef tract. Mar Ecol Prog Ser. 2012; 467:89–96. https://doi.org/10.3354/meps09950 43. Meinshausen M, Smith SJ, Calvin K, Daniel JS, Kainuma MLT, Lamarque JF, et al. The RCP green- house gas concentrations and their extensions from 1765 to 2300. Climatic Change. 2011; 109(1– 2):213–41. https://doi.org/10.1007/s10584-011-0156-z 44. Mehrbach C, Culberson CH, Hawley JE, Pytkowicz RM. Measurement of Apparent Dissociation-Con- stants of Carbonic-Acid in Seawater at Atmospheric-Pressure. Limnol Oceanogr. 1973; 18(6):897–907. https://doi.org/10.4319/lo.1973.18.6.0897 45. Dickson AG, Millero FJ. A Comparison of the Equilibrium-Constants for the Dissociation of Carbonic- Acid in Seawater Media. Deep-Sea Res. 1987; 34(10):1733–43. https://doi.org/10.1016/0198-0149(87) 90021-5 46. Fitt WK, Brown BE, Warner ME, Dunne RP. Coral bleaching: interpretation of thermal tolerance limits and thermal thresholds in tropical corals. Coral Reefs. 2001; 20:51–65 47. Cruz ICS, Leal MC, Mendes CR, Kikuchi RK, Rosa R, Soares AMV, et al. White but not bleached: photophysiological evidence from white Montastraea cavernosa reveals potential overestimation of coral bleaching. Mar. Biol. 2015; 162:889–899. 48. Rasher DB, Hay ME. Chemically rich seaweeds poison corals when not controlled by herbivores. P Natl Acad Sci USA. 2010; 107(21):9683–9688. 49. Rasher DB, Stout PE, Engel S, Kubanek J, Hay ME. Macroalgal terpenes function as allelopathic

agents against reef corals. P Natl Acad Sci USA. 2011; 108(43):17726–1773. 50. Shearer TL, Rasher DB, Snell TW, Hay ME. Gene expression patterns of the coral Acropora millepora in response to contact with macroalgae. Coral Reefs. 2012; 31:1177–1192. https://doi.org/10.1007/ s00338-012-0943-7 PMID: 23997654 51. Shearer TB, Snell TW, Hay ME. Gene expression of corals in response to macroalgal competitors. PLOS One. 9(12):e114525. https://doi.org/10.1371/journal.pone.0114525 PMID: 25500576 52. Fox J, Weisberg S. An {R} Companion to Applied Regression, Third Edition. Thousand Oaks CA: Sage. 2019; URL: https://socialsciences.mcmaster.ca/jfox/Books/Companion/ 53. Wheeler B, Torchiano M. ob Wheeler and Marco Torchiano lmPerm: Permutation Tests for Linear Mod- els. R package version 2.1.0. 2016; https://CRAN.R-project.org/package=lmPerm 54. Sellers K, Morris DS, Balakrishnan N, Davenport D. multicmp: Flexible Modeling of Multivariate Count Data via the Multivariate Conway-Maxwell-Poisson Distribution. R package version 1.1. 2018. https:// CRAN.R-project.org/package=multicmp 55. Diaz-Pulido G, Gouezo M, Tilbrook B, Dove S, Anthony KRN. High CO2 enhances the competitive strength of seaweeds over corals. Ecol Lett. 2011; 14(2):156–62. https://doi.org/10.1111/j.1461-0248. 2010.01565.x PMID: 21155961 56. McCormick MI, Watson SA, Munday PL. Ocean acidification reverses competition for space as habitats degrade. Scientific Reports. 2013; 3. https://doi.org/10.1038/srep03280 PMID: 24263692

57. Porter JW, Lewis SK, Porter KG. The effect of multiple stressors on the Florida Keys coral reef ecosys- tem: a landscape hypothesis and a physiological test. Limnol Oceanogr. 44:941–949. 58. Vermeij MJA, Fogarty ND, Miller MW. Pelagic conditions affect larval behavior, survival, and settlement patterns in the Caribbean coral Montastraea faveolata. 2006. Mar.Ecol.Prog. Ser. 310:119–128. PLOS ONE Climate change alters coral-coral competition PLOS ONE | https://doi.org/10.1371/journal.pone.0235465 August 13, 2020 15 / 16